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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13408323_13419858_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13408323 - 13419858
Intron Length:
11536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCGCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
TTGTTCTTCTCT
Flanking Amino Acid:
MALLLETLAVLALQARRRR
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.8
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
73.2
0.52
0.9
68.6
31.7
Minor 5ss
44.1
-0.6
2.9
58
40.8
Minor BPS
44.9
-0.3
3.6
78.93
43.7

Associated Gene:

Gene:
SRPK2
Ensembl Gene ID:
ENSAPLG00000004027
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020028
13268767 - 13419886
151120