Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134083257_134085890_F

Intron Information:

Intron Rank:

125928

Intron Class:

major

Intron Phase:

Intron Coordinates:

134083257 - 134085890

Intron Length:

2634

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAGCAA

5'SS Class:

major

3'SS Sequence:

TTCTTTATTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TTTTCTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.3

0.5

1.1

60.8

39.4

Major BPS

83.9

0.84

73.9

41.3

Major PPT

90.2

0.9

0.7

89.1

26.1

Minor 5ss

35.5

-1.6

3.3

46.5

48.8

Minor BPS

76.2

0.9

1.4

91.47

32.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017841

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030507

134080293 - 134086077

5785