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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134116578_134120732_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134116578 - 134120732
Intron Length:
4155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
TGGTTTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGGTTTTCCACA
Flanking Amino Acid:
SGKTVKKYHELLGLLETRAH
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.6
31
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.8
0.63
0.9
72.5
37.8
Minor 5ss
49.9
-0
2.4
67.2
43.9
Minor BPS
47
-0.2
1.9
59.35
41

Associated Gene:

Gene:
PDGFD
Ensembl Gene ID:
ENSAPLG00000009485
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017509
134116091 - 134250984
134894