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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134120948_134133073_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
134120948 - 134133073
Intron Length:
12126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TACTAATGAACT
Flanking Amino Acid:
GRSYHDRKSKVDLDRLNDDV
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.6
40.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
84.2
0.77
0.8
78.2
34.9
Minor 5ss
31.4
-2.1
3.1
39
46.4
Minor BPS
51.1
0.11
1.9
72.87
43

Associated Gene:

Gene:
PDGFD
Ensembl Gene ID:
ENSAPLG00000009485
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027882
134109604 - 134275940
166337
ENSAPLT00000037512
134109528 - 134251762
142235
ENSAPLT00000017509
134116091 - 134250984
134894
ENSAPLT00000035486
134109604 - 134251757
142154
ENSAPLT00000046947
134109604 - 134251757
142154
ENSAPLT00000009890
134120586 - 134213374
92789
ENSAPLT00000034544
134115258 - 134251757
136500
ENSAPLT00000028737
134109604 - 134251757
142154
ENSAPLT00000045121
134109528 - 134251762
142235