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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134133276_134138024_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134133276 - 134138024
Intron Length:
4749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
ATGTCACTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
CTTATTCCAAGT
Flanking Amino Acid:
NWESVTSSVSGVSYPSPSVT
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
66.8
0.38
0.9
63.6
37.7
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
42.1
-0.5
2
60.72
43.3

Associated Gene:

Gene:
PDGFD
Ensembl Gene ID:
ENSAPLG00000009485
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017509
134116091 - 134250984
134894
ENSAPLT00000037512
134109528 - 134251762
142235
ENSAPLT00000009890
134120586 - 134213374
92789
ENSAPLT00000035486
134109604 - 134251757
142154
ENSAPLT00000034544
134115258 - 134251757
136500
ENSAPLT00000027882
134109604 - 134275940
166337
ENSAPLT00000046947
134109604 - 134251757
142154