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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134133276_134162372_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134133276 - 134162372
Intron Length:
29097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCACTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
CTTATTCCAAGT
Flanking Amino Acid:
PGFKICYSLVGVSYPSPSVT
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
66.8
0.38
0.9
63.6
37.7
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
42.1
-0.5
2
60.72
43.3

Associated Gene:

Gene:
PDGFD
Ensembl Gene ID:
ENSAPLG00000009485
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045121
134109528 - 134251762
142235