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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134161710_134162372_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134161710 - 134162372
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTGGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTATCCTGATTA
Flanking Amino Acid:
PGFKICYSLVCSSKEADFAN
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
73.8
0.53
1
68.6
42.1
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
61.3
0.35
1.7
73.36
38.4

Associated Gene:

Gene:
PDGFD
Ensembl Gene ID:
ENSAPLG00000009485
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028737
134109604 - 134251757
142154
ENSAPLT00000027882
134109604 - 134275940
166337
ENSAPLT00000037512
134109528 - 134251762
142235
ENSAPLT00000017509
134116091 - 134250984
134894
ENSAPLT00000035486
134109604 - 134251757
142154
ENSAPLT00000034544
134115258 - 134251757
136500