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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134162554_134166639_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
134162554 - 134166639
Intron Length:
4086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
AACTGGTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATCCTTCAAAC
Flanking Amino Acid:
GLEEPENEICRYDFVEVEDL
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
60.4
0.23
1
50.4
43
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
51.6
0.03
1.6
61.6
36.8

Associated Gene:

Gene:
PDGFD
Ensembl Gene ID:
ENSAPLG00000009485
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009890
134120586 - 134213374
92789
ENSAPLT00000034544
134115258 - 134251757
136500
ENSAPLT00000028737
134109604 - 134251757
142154
ENSAPLT00000027882
134109604 - 134275940
166337
ENSAPLT00000046947
134109604 - 134251757
142154
ENSAPLT00000017509
134116091 - 134250984
134894
ENSAPLT00000035486
134109604 - 134251757
142154