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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134166845_134213292_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
134166845 - 134213292
Intron Length:
46448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TGACTACTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTTCTACAAGT
Flanking Amino Acid:
AGSDGICSRESNHLTDLYR
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
65.4
0.35
1
59.3
40.7
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
49.4
0.04
2.1
75.59
41.1

Associated Gene:

Gene:
PDGFD
Ensembl Gene ID:
ENSAPLG00000009485
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009890
134120586 - 134213374
92789