Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134328556_134336313_R

Intron Information:

Intron Rank:

139992

Intron Class:

major

Intron Phase:

Intron Coordinates:

134328556 - 134336313

Intron Length:

7758

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGATCA

5'SS Class:

strong_major

3'SS Sequence:

CTTGTTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAGGAT

U12 Branch Point Sequence:

TTGTTTTTACAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.4

27.6

Major BPS

51.9

0.05

1.4

51.7

43.9

Major PPT

88.6

0.87

0.7

83.2

31.9

Minor 5ss

38.2

-1.3

48.6

47.1

Minor BPS

51.1

-0.1

1.8

59.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022705

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025926

134328096 - 134336957

8862