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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13433686_13434548_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13433686 - 13434548
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGATTT
5'SS Class:
major
3'SS Sequence:
CTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ACTTTCTCAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
74.2
37.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
49.5
-0
2.8
65.2
46
Minor BPS
60.6
0.41
1.6
75.64
40.8

Associated Gene:

Gene:
PUS7
Ensembl Gene ID:
ENSAPLG00000005024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042522
13433520 - 13453498
19979
ENSAPLT00000005216
13433520 - 13453739
20220