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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134364134_134364833_R

Intron Information:

Intron Rank:
139994
Intron Class:
major
Intron Phase:
Intron Coordinates:
134364134 - 134364833
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
AACTCCTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
AACAGCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
71.6
0.49
0.9
62.6
38.8
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
59
0.36
1.9
72.43
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022705
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032611
134335983 - 134364891
28909