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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13437888_13438740_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13437888 - 13438740
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATGTTTTACCA
Flanking Amino Acid:
KNKETSVAIEVIEDSKEKRT
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.1
0.65
0.9
73.7
35.7
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
55.9
0.18
1.7
67.28
39.8

Associated Gene:

Gene:
PUS7
Ensembl Gene ID:
ENSAPLG00000005024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042522
13433520 - 13453498
19979
ENSAPLT00000005216
13433520 - 13453739
20220