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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13440907_13443355_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13440907 - 13443355
Intron Length:
2449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTAAAG
Flanking Amino Acid:
KALAKVRTATDPRKHSWPKS
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.8
0.69
1
82.3
33.1
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
66.8
0.39
1.4
68.96
38.4

Associated Gene:

Gene:
PUS7
Ensembl Gene ID:
ENSAPLG00000005024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042522
13433520 - 13453498
19979