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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13444811_13446478_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13444811 - 13446478
Intron Length:
1668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
CTAAGCATAAGG
Flanking Amino Acid:
AITVQEIAVLRITAQRLAHL
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
83.5
0.75
0.7
82.1
30
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
40.7
-0.8
2.2
45.67
46.3

Associated Gene:

Gene:
PUS7
Ensembl Gene ID:
ENSAPLG00000005024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042522
13433520 - 13453498
19979
ENSAPLT00000005216
13433520 - 13453739
20220