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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13449170_13451639_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13449170 - 13451639
Intron Length:
2470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
CTCTGATTAAAT
Flanking Amino Acid:
GFDVIYPKHKIGEAYKEMLV
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
89.6
0.89
0.6
84.7
22.9
Minor 5ss
39.5
-1.2
3
50.5
40
Minor BPS
49
0
2.1
70.06
46.5

Associated Gene:

Gene:
PUS7
Ensembl Gene ID:
ENSAPLG00000005024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042522
13433520 - 13453498
19979
ENSAPLT00000005216
13433520 - 13453739
20220