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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134545774_134548924_R

Intron Information:

Intron Rank:
141590
Intron Class:
major
Intron Phase:
Intron Coordinates:
134545774 - 134548924
Intron Length:
3151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTATTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83.5
0.75
0.8
80.7
36.3
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
50.5
0.09
1.9
75.74
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023524
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047809
134502431 - 134549221
46791