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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13455924_13456000_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13455924 - 13456000
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGTGCTAAAGT
Flanking Amino Acid:
WHKILKDKLSSDFEEVLTQL
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86
0.81
0.9
80.8
36.4
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
49.5
0.04
2.3
75.11
47.7

Associated Gene:

Gene:
RINT1
Ensembl Gene ID:
ENSAPLG00000005381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005582
13454520 - 13464312
9793