About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13456151_13457305_F

Intron Information:

Intron Rank:
5
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
13456151 - 13457305
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CTGTCAAACTTAG|C
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
TTGTCCTTGACT
Flanking Amino Acid:
LFCQLLKLQTSDELLTKPKQ
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48.5
-0
1.4
55
44.6
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
58.9
0.2
1
56.4
38
Minor 5ss
95.1
1.52
0.8
90.6
20
Minor BPS
87.4
1.26
0.9
95.37
31.5

Associated Gene:

Gene:
RINT1
Ensembl Gene ID:
ENSAPLG00000005381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005582
13454520 - 13464312
9793