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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13457463_13457983_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13457463 - 13457983
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAAATAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
GNKPTNVLNKPEWYLTQVLM
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.3
40.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.4
0.39
1.2
74.6
38.2
Minor 5ss
37.7
-1.4
3.1
47.3
48.3
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
RINT1
Ensembl Gene ID:
ENSAPLG00000005381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005582
13454520 - 13464312
9793