Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134579131_134623281_R

Intron Information:

Intron Rank:

130030

Intron Class:

major

Intron Phase:

Intron Coordinates:

134579131 - 134623281

Intron Length:

44151

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAG|GCAAGTCTC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTCAG

U12 Branch Point Sequence:

TTTTTTTTTCCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.6

1.15

0.7

90.2

25.7

Major BPS

62.2

0.3

1.5

71.4

36.6

Major PPT

98.2

1.08

0.5

92.3

26.6

Minor 5ss

28.5

-2.5

3.9

43.8

43.9

Minor BPS

44.4

-0.4

3.6

74.12

37.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017161

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028679

134568754 - 134623574

54821