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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13460389_13461196_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13460389 - 13461196
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTGTTCCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TAGTACTTACGT
Flanking Amino Acid:
TVLADWADNVFFLQLQQAEL
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
73.5
0.53
0.8
66.2
35.9
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
49.2
0.02
2.1
69.91
46.5

Associated Gene:

Gene:
RINT1
Ensembl Gene ID:
ENSAPLG00000005381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005582
13454520 - 13464312
9793