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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13461412_13462064_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13461412 - 13462064
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATTCTG
5'SS Class:
strong_major
3'SS Sequence:
AAATTTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TAATAGTGAAAT
Flanking Amino Acid:
TDAAKLYKKERWLSLPSQAE
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
70.7
41.1
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
78.1
0.63
0.9
74.5
40.2
Minor 5ss
32.5
-2
3
41
45.3
Minor BPS
44.5
-0.3
2.3
65.95
43.4

Associated Gene:

Gene:
RINT1
Ensembl Gene ID:
ENSAPLG00000005381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005582
13454520 - 13464312
9793