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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134689717_134692963_R

Intron Information:

Intron Rank:
151030
Intron Class:
major
Intron Phase:
Intron Coordinates:
134689717 - 134692963
Intron Length:
3247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
72
39.3
Major BPS
100
1.24
0.5
100
0
Major PPT
87.3
0.84
0.7
86.5
26.1
Minor 5ss
31.8
-2.1
3.5
46.7
48.6
Minor BPS
62.2
0.46
1.7
80
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028759
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024528
134689427 - 134695991
6565
ENSAPLT00000018379
134689427 - 134693218
3792