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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134701660_134702651_R

Intron Information:

Intron Rank:
150202
Intron Class:
major
Intron Phase:
Intron Coordinates:
134701660 - 134702651
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCTACTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.6
0.6
0.9
75.1
35
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
70.3
0.72
1.4
81.86
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033144
134700450 - 134702875
2426