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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13475174_13478661_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13475174 - 13478661
Intron Length:
3488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGATTCTGAACC
Flanking Amino Acid:
STSNPVHNRQKTSNRTGRIR
Intron Amino Acid Position:
828

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
86.7
0.83
0.7
85.5
29.2
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
67.6
0.53
1.4
73.01
37.2

Associated Gene:

Gene:
ATXN7L1
Ensembl Gene ID:
ENSAPLG00000005905
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040031
13475132 - 13586813
111682
ENSAPLT00000028954
13475132 - 13586813
111682
ENSAPLT00000006113
13475132 - 13586813
111682