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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134856221_134912600_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
134856221 - 134912600
Intron Length:
56380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATCCTTTTATT
Flanking Amino Acid:
RFVFLYDTDRGYSILQAIME
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.6
0.73
0.7
81.4
29
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
62.6
0.48
1.6
78.34
38.2

Associated Gene:

Gene:
GRIA4
Ensembl Gene ID:
ENSAPLG00000012015
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027118
134779412 - 134997345
217934
ENSAPLT00000024069
134779412 - 134993498
214087
ENSAPLT00000012651
134779412 - 135002569
223158