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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13487062_13488252_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13487062 - 13488252
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTGTC
5'SS Class:
major
3'SS Sequence:
CCTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTCTATGAACA
Flanking Amino Acid:
FSGHHPRPLGFCSYGSRLMG
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
72.3
37.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
88.8
0.87
0.6
84
24
Minor 5ss
42.9
-0.8
3.1
52.3
45
Minor BPS
59
0.28
1.7
75.09
35.4

Associated Gene:

Gene:
ATXN7L1
Ensembl Gene ID:
ENSAPLG00000005905
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028954
13475132 - 13586813
111682
ENSAPLT00000006113
13475132 - 13586813
111682
ENSAPLT00000040031
13475132 - 13586813
111682