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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13491129_13491990_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13491129 - 13491990
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
ACCCTATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGCTTTTTAACC
Flanking Amino Acid:
KPCTRSLTCKTHSLNHRRAV
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.7
0.51
0.8
69.8
34.9
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
73
0.7
1.2
74.15
36.9

Associated Gene:

Gene:
ATXN7L1
Ensembl Gene ID:
ENSAPLG00000005905
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028954
13475132 - 13586813
111682
ENSAPLT00000006113
13475132 - 13586813
111682