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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134929031_134930920_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134929031 - 134930920
Intron Length:
1890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
ATTGATTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AATTCTTAAATT
Flanking Amino Acid:
KGYHYIVANLGFKDISLERF
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.9
32.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
75.3
0.57
0.9
66.6
44.2
Minor 5ss
40.7
-1
3.1
54.8
43.3
Minor BPS
65.8
0.57
1.6
79.18
37.3

Associated Gene:

Gene:
GRIA4
Ensembl Gene ID:
ENSAPLG00000012015
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027118
134779412 - 134997345
217934
ENSAPLT00000024069
134779412 - 134993498
214087
ENSAPLT00000012651
134779412 - 135002569
223158