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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134931080_134932458_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134931080 - 134932458
Intron Length:
1379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGAT
5'SS Class:
major
3'SS Sequence:
TTCATCCATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTTTCTTCATC
Flanking Amino Acid:
EYPGSETPPKYTSALTYDGV
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66
39.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72.6
0.51
0.9
70.8
35
Minor 5ss
29.9
-2.3
3.8
46.5
48.8
Minor BPS
64.4
0.43
1.7
74.33
36.8

Associated Gene:

Gene:
GRIA4
Ensembl Gene ID:
ENSAPLG00000012015
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012651
134779412 - 135002569
223158
ENSAPLT00000027118
134779412 - 134997345
217934
ENSAPLT00000024069
134779412 - 134993498
214087