Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134939391_134948110_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

134939391 - 134948110

Intron Length:

8720

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGGTAT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCATTATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

TTCTCCTTTACA

Flanking Amino Acid:

NRTVVVTTILEAPYVMFKKN

Intron Amino Acid Position:

424

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

77.4

33.3

Major BPS

87.6

0.93

0.9

89.3

Major PPT

82.4

0.73

0.7

77.5

29.8

Minor 5ss

38.5

-1.3

3.4

52.2

Minor BPS

76.6

0.83

1.6

83.55

36.9

Associated Gene:

Gene:

GRIA4

Ensembl Gene ID:

ENSAPLG00000012015

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027118

134779412 - 134997345

217934

ENSAPLT00000024069

134779412 - 134993498

214087

ENSAPLT00000012651

134779412 - 135002569

223158