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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13497101_13505161_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13497101 - 13505161
Intron Length:
8061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTGGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
GCAACTTGAAGA
Flanking Amino Acid:
FPSKVSRDKPCVPVPVVSLE
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
76
34.9
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
82.4
0.73
0.9
76.3
37.7
Minor 5ss
34.1
-1.8
3.1
41.9
38.9
Minor BPS
46
-0.3
1.7
50.48
40.6

Associated Gene:

Gene:
ATXN7L1
Ensembl Gene ID:
ENSAPLG00000005905
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040031
13475132 - 13586813
111682
ENSAPLT00000028954
13475132 - 13586813
111682
ENSAPLT00000006113
13475132 - 13586813
111682