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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134986748_134993462_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134986748 - 134993462
Intron Length:
6715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCCTC
5'SS Class:
major
3'SS Sequence:
TTTCCACGTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATGTTATTT
Flanking Amino Acid:
ECGSGGGDSKNSCKPCRFET
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
68.3
42.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
64.3
0.32
1.1
64.9
35.6
Minor 5ss
38.8
-1.3
3
51.3
45.3
Minor BPS
49.1
0.01
2.3
75.79
41.6

Associated Gene:

Gene:
GRIA4
Ensembl Gene ID:
ENSAPLG00000012015
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024069
134779412 - 134993498
214087