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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1350242_1350938_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1350242 - 1350938
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAAGCTC
5'SS Class:
major
3'SS Sequence:
AAAGAGCAGGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCCCAA
U12 Branch Point Sequence:
TGTGCCCAAGGT
Flanking Amino Acid:
QDVYLLPKKMASSSPERFGV
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
61.1
43.7
Major BPS
49.1
-0
1.3
58.4
40.3
Major PPT
37.9
-0.7
1.6
25.4
36.4
Minor 5ss
34.2
-1.8
3.5
42
45
Minor BPS
39.8
-0.7
2.3
61.09
48.1

Associated Gene:

Gene:
AHCYL2
Ensembl Gene ID:
ENSAPLG00000015897
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016614
1350099 - 1362879
12781