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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135032395_135034236_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135032395 - 135034236
Intron Length:
1842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TGAAATGTAATT
Flanking Amino Acid:
EEEEDPQNFEFPIEEEEEIL
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
81
0.7
0.7
75.9
26.3
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
45.2
-0.2
2.1
63.21
41.1

Associated Gene:

Gene:
MSANTD4
Ensembl Gene ID:
ENSAPLG00000011957
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032931
135031739 - 135040364
8626
ENSAPLT00000012438
135031739 - 135041311
9573