Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135034864_135040080_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

135034864 - 135040080

Intron Length:

5217

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCAAATA

5'SS Class:

major

3'SS Sequence:

TTTTTTCTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATTTAT

U12 Branch Point Sequence:

TATCTTTGAGAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

70.4

35.3

Major BPS

70.9

0.52

1.2

63.7

43.9

Major PPT

88.7

0.87

0.6

89.2

19.8

Minor 5ss

29.9

-2.3

3.2

39.8

45.8

Minor BPS

46.3

-0.2

1.7

64.73

39.2

Associated Gene:

Gene:

MSANTD4

Ensembl Gene ID:

ENSAPLG00000011957

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032931

135031739 - 135040364

8626