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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135049116_135051475_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135049116 - 135051475
Intron Length:
2360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTCACA
Flanking Amino Acid:
CVLAACSDFFRAMFEVNMKE
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.4
34.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.7
0.74
0.8
77.2
35.5
Minor 5ss
42.3
-0.8
3
57.2
47.1
Minor BPS
56.7
0.2
2
74.51
36.9

Associated Gene:

Gene:
KBTBD3
Ensembl Gene ID:
ENSAPLG00000018868
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044434
135047495 - 135053641
6147