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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135051718_135052842_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
135051718 - 135052842
Intron Length:
1125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCCAT
5'SS Class:
major
3'SS Sequence:
TTTTCCGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
CATTACTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
64.9
42.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
87.1
0.84
0.8
84.9
29.9
Minor 5ss
32.7
-2
3.4
46.2
49.1
Minor BPS
57.6
0.32
1.8
74.03
42.9

Associated Gene:

Gene:
KBTBD3
Ensembl Gene ID:
ENSAPLG00000018868
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044434
135047495 - 135053641
6147