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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135053191_135053576_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
135053191 - 135053576
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TCTTCTGTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
78.7
30.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
76.5
0.6
0.9
69.5
41.5
Minor 5ss
44
-0.7
2.8
55.4
44
Minor BPS
50.2
0.08
2.2
74.81
43.2

Associated Gene:

Gene:
KBTBD3
Ensembl Gene ID:
ENSAPLG00000018868
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044434
135047495 - 135053641
6147