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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135079749_135080213_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135079749 - 135080213
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATGTAT
5'SS Class:
major
3'SS Sequence:
TTTTATGTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTATTCTGAAAA
Flanking Amino Acid:
MQLGMFHRHWALKESFLKAI
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
68.5
38.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.7
0.71
0.9
76.7
37.2
Minor 5ss
38
-1.4
3.3
47.2
48.3
Minor BPS
58.7
0.27
1.5
67.41
38

Associated Gene:

Gene:
AASDHPPT
Ensembl Gene ID:
ENSAPLG00000011885
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012364
135058901 - 135087212
28312