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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1351018_1351090_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1351018 - 1351090
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TTTTGCTCACCA
Flanking Amino Acid:
FVLSITATTQALALIELYNA
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
53.3
0.1
2.2
75.44
42.2

Associated Gene:

Gene:
AHCYL2
Ensembl Gene ID:
ENSAPLG00000015897
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016614
1350099 - 1362879
12781