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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135157447_135163345_R

Intron Information:

Intron Rank:
135889
Intron Class:
major
Intron Phase:
Intron Coordinates:
135157447 - 135163345
Intron Length:
5899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
GTATTAATAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTGTATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
72.7
37.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
62
0.27
1
56.8
42.3
Minor 5ss
35.5
-1.6
3
44.3
37.2
Minor BPS
63.7
0.43
1.7
75.76
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034538
135156483 - 135163637
7155