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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1351673_1352238_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1351673 - 1352238
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CGCCGTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTGGGTTTAACT
Flanking Amino Acid:
MGHSNTEIDVASLRTPELTW
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
64.7
0.33
1
60.7
40.3
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
54.5
0.22
1.9
70.68
46.8

Associated Gene:

Gene:
AHCYL2
Ensembl Gene ID:
ENSAPLG00000015897
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016614
1350099 - 1362879
12781