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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135200677_135200771_R

Intron Information:

Intron Rank:
133325
Intron Class:
major
Intron Phase:
Intron Coordinates:
135200677 - 135200771
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTTCTGTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.4
0.71
0.9
77.7
40.6
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
57.3
0.31
2
78.01
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018972
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030733
135200072 - 135200919
848