About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135341413_135396115_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135341413 - 135396115
Intron Length:
54703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTTTCTAAACT
Flanking Amino Acid:
EDSGSESKDKVMEIKGQMIH
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.1
36.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.3
0.88
0.7
89
27.8
Minor 5ss
33.8
-1.8
2.9
41.1
44.9
Minor BPS
71.9
0.77
1.7
86.99
39.2

Associated Gene:

Gene:
GUCY1A2
Ensembl Gene ID:
ENSAPLG00000016270
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016976
135284091 - 135429750
145660