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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1353550_1354645_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1353550 - 1354645
Intron Length:
1096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGCTTCTCACAC
Flanking Amino Acid:
EIDPICALQACMDGFRLVKL
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.5
38.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
84.3
0.77
0.7
77
31.7
Minor 5ss
39.1
-1.2
3.4
53.8
44.4
Minor BPS
46.1
-0.3
1.9
56.07
42.2

Associated Gene:

Gene:
AHCYL2
Ensembl Gene ID:
ENSAPLG00000015897
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016614
1350099 - 1362879
12781