About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135396835_135411236_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135396835 - 135411236
Intron Length:
14402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
AGTATCTCATTT
Flanking Amino Acid:
GILQCTANVLGLKLEEMQEK
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
79
0.65
0.8
73.5
31.2
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
47.2
-0.1
1.8
63.94
40.5

Associated Gene:

Gene:
GUCY1A2
Ensembl Gene ID:
ENSAPLG00000016270
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016976
135284091 - 135429750
145660