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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135411359_135415236_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135411359 - 135415236
Intron Length:
3878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTACTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GATTCCATAACT
Flanking Amino Acid:
TLQYFEHQVIGYRDAEKNFH
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
85.2
32.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.2
0.81
0.7
82.8
27.4
Minor 5ss
38.2
-1.3
3.4
49.9
46.4
Minor BPS
74.3
0.84
1.6
87.7
36.7

Associated Gene:

Gene:
GUCY1A2
Ensembl Gene ID:
ENSAPLG00000016270
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016976
135284091 - 135429750
145660