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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135537077_135539372_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135537077 - 135539372
Intron Length:
2296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTTGTGTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
AGTCTGTTAAAC
Flanking Amino Acid:
DLSSKDIRKSVPKGLPYFSV
Intron Amino Acid Position:
952

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
80.2
0.68
0.9
76.5
37.7
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
47.7
-0.1
2.1
60.15
38.4

Associated Gene:

Gene:
CWF19L2
Ensembl Gene ID:
ENSAPLG00000016072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016775
135535928 - 135604102
68175